Pioneers Chelsea battled again from 1-0 down to secure an eighth straight Premier League win, and City's disappointments bubbled over in damage time.
Aguero was expelled for a wild jump on Chelsea shield David Luiz, with partner Fernandinho additionally demonstrated a red card for conflicting with Cesc Fabregas in the scuffle that took after.
It is a pity the diversion completed this way," Guardiola said. "I don't that way and I apologize for what happened.
"I don't believe Aguero's test is purposeful. Both players were solid, that is all.
"At that point Fernandinho headed toward safeguard his colleague as a result of what the adversary did to Aguero.
"At the point when (City winger) Nolito did that against Bournemouth, it was a red card for him and a three-amusement boycott. That is the reason Fernandinho went to shield his colleague, that is all.
"I have not addressed him about it - on the off chance that it is on TV, we will see about it."
Fernandinho will be suspended for three matches and Aguero will confront a four-amusement boycott since he has as of now been sent off once for fierce direct this season - the review red card he got for a test on West Ham safeguard Winston Reid in August.
The match will miss diversions against Leicester, Watford and Arsenal and, while Fernandinho can return at Hull on 26 December, Aguero should hold up until City's excursion to Anfield to play Liverpool on New Year's Eve.
Arbitrator Anthony Taylor had infuriated City's players and fans with some of his prior choices, including a first-half test by Luiz on Aguero that went unpunished.
In any case, Guardiola declined to point the finger at Taylor for the annihilation, his first at Etihad Stadium since he assumed responsibility of City in the mid year.
"We didn't win since we missed a great deal of shots, not due to the arbitrator's choices," the Spaniard included.
"I am pleased with my group and how we played - I came here to attempt to play the way we played in this amusement.
"You need to recollect our identity playing, and that we made a larger number of chances than we did in our last two amusements against Burnley and Crystal Palace, when we won.
"Be that as it may, in the containers we are not sufficiently solid. At the point when the open doors arrive, we need to score objectives since when we don't it is intense rationally for the players.
"It is an issue we have had all season. It is troublesome for us to score objectives and we surrender them effectively."
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